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Lecture 3

Bio 451 Molecular Biology Techniques

Chromatography

Many notes taken from "Molecular Biomethods Handbook" 1998. Edited by Ralph Rapley and John M. Walker. Humana Press, Totowa, NJ.

Brief History

The name derives from separation of plant pigments.

Early on, Egyptians used this technology to separate dyes on papyrus.

In 1906, the Russian botanist Tswett created the name for chromatography.

In 1944, Martin and Synge developed the technique of partition chromatography and received a Nobel Prize.

In 1960, Gel Chromatography was introduced.

General Principles of Chromatography

Examples of different stationary and mobile phases

Size-Exclusion Chromatography

It is also known as gel-filtration chromatography and separates proteins and other biological macromolecules on the basis of molecular size. This type of chromatography is compatible with physiological conditions.

The solid-phase matrix consists of porous beads (100-250µm) that are packed into a column with a mobile-liquid phase flowing through the column. The mobile phase has access to both the volume inside the pores and the volume external to the beads. The high porosity typically leads to a total liquid volume of >95% of the packed column.

During separation by this method, large molecules remain in the volume external to the beads because they are unable to enter the pores. The resulting shorter flow path means that they pass through the column relatively rapidly, emerging early. Proteins that are excluded from the pores completely elute in what is designated the void volume, Vo. This is often determined experimentally by the use of a high-molecular weight component, such a Blue Dextran or calf thymus DNA. Small molecules that can access the liquid within the pores of the beads are retained longer and therefore pass more slowly through the column. The elution volume for material included in the pores is designated the total volume, Vt. This represents the total liquid volume of the column and is often determined by small molecules, such as vitamin B12.

The elution volume for a given protein will lie between Vo and Vt, and is designated the elution volume, Ve. A partition coefficient can be determined for each protein as Kav:

Kav = (Ve-Vo)/(Vt-Vo)

 

In size exclusion, the macromolecules are not physically retained, unlike adsorption techniques; therefore, the protein will elute in a defined volume between Vo and Vt. If the protein elutes before the void volume (Ve<Vo) this suggests channeling through the column owing to improper packing or operation of the column. If the protein elutes after the total volume (Ve>Vt), then some interaction must have occurred between the matrix and the protein of interest.

Size exclusion tends to be used at the end of a purification scheme when impurities are low in number and the target protein has been purified and concentrated by earlier chromatography steps. An exception to this is membrane proteins, where gel filtration may be used first because concentration techniques are not readily used and the material will be progressively diluted during the purification scheme.

 

Several parameters are important in size-exclusion chromatography.

Practical Procedures

Ion Exchange Chromatography

Ion-Exchange Chromatography

Proteins contain charged groups on their surfaces that enhance their interaction with solvent and hence their solubility. At physiological pH, some of these charged groups are cationic (positively charged, e.g., lysine), whereas others are anionic (negatively charged, e.g., aspartate). Because proteins differ from each other in their amino-acid sequence, the net charge possessed by a protein at physiological pH is determined ultimately by the balance between these charges (i.e. negatively charged proteins possess more negatively charged groups than positively charged groups). This also underlies the different isoelectric points (pIs) of proteins. Ion-exchange chromatography separates proteins first on the basis of their charge type (cationic or anionic) and, second, on the basis of relative charge strength (e.g. strongly anionic from weakly anionic).

The basis of ion-exchange chromatography is that charged ions can freely exchange with ions of the same type. In this context, the mass of the ion is irrelevant. Therefore, it is possible for a bulky anion like a negatively charged protein to exchange with chloride ions. This process can later be reversed by washing with chloride ions in the form of a NaCl of KCl solution. Such washing removes weakly bound proteins first, followed by more strongly bound proteins with greater net negative charge.

Like most column chromatography techniques, ion exchange chromatography requires a stationary phase, which is usually composed of insoluble, hydrated polymers, such as cellulose, dextran, and agarose.

The ion-exchange groups are immobilized on this stationary phase. Some of the anion exchangers are quaternary ammonium, quaternary aminoethyl and diethylaminoethyl (DEAE). Some of the cation exchangers are sulfopropyl, methyl sulfonate and carboxymethyl.

Practical requirements

 

Ion Exchange Chromatography

Principle:

Selecting the adequate ion exchanger

Other properties of ion exchange resin

Applications of ion exchangers

 

Affinity Chromatography

Principle:

Coupling the ligand to the matrix

Affinity chromatography procedures

Applications

High Performance (Pressure) Liquid Chromatography (HPLC)

www.chem.vt.edu/chem-ed/sep/lc/hplc.html

 

Matrix for HPLC

 

Sample injection.

 

Thin layer Chromatography

 

Gas Chromatography
Look at the following website: http://www.shu.ac.uk/schools/sci/chem/tutorials/chrom/gaschrm.htm

Quatination of Proteins:

Beer's law

http://www.shu.ac.uk/schools/sci/chem/tutorials/molspec/beers1.htm

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