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Dennis Livesay (top left) uses the sophisticated equipment in the CM3D lab he and colleagues helped create. His study of protein flexibility and stability may contribute to cystic fibrosis and Alzheimers research. |
Thanks to a four-year $960,000 research grant from the National Institutes of Health, chemistry associate professor Dennis Livesay is exploring the balance between protein flexibility and stability. Improper protein folding is linked to a variety of medical conditions, including cystic fibrosis, Alzheimers and even Mad Cow disease.
Livesay, who will share the grant with a colleague at the University of North Carolina, Charlotte, specializes in computational biology and bioinformatics, the use of techniques from applied physics, mathematics, informatics, statistics and computer science to solve biological problems. “This grant will allow us to build a theoretical framework for deciphering these complex physical relationships that are so critical to protein function and disease,” says Livesay.
The grant will support research on developing the next generation of the Distance Constraint Model (DCM), a unique biophysical modeling scheme that simultaneously calculates stability and flexibility metrics. “The DCM is extremely computationally efficient and thus provides a means to quantify stability/flexibility relationships within thousands of proteins,” explains Livesay, whose research was done in the university’s Center for Macromolecular Modeling and Material Design (CM3D), which he helped develop.
CM3D centralizes a pair of interdisciplinary labs that bring chemists, physicists, engineers and computer scientists into one research center. By networking 44 personal computers, the professors created a networked computer cluster powerful enough to run millions of DCM calculations. This year, they received a $500,000 grant from the W.M. Keck Foundation to create a state-of-the-art experimental facility that will complement the existing computational facility. |